Modules Update December 2022¶
Since the last module update in December 2021, we have:
- added/moved 84 modules to production
- added 9 modules to the development environment
- deprecated 5 modules
- deleted 12 modules
The following 84 module files have been added or moved to production:
Application Name | Application Version | Set as Default? |
---|---|---|
alphafold | 2.0.0 | No |
alphafold | 2.1.0 | Yes |
anaconda3 | 2022.05 | No |
aspera | 3.9.8 | Yes |
bcftools | 1.16 | Yes |
bcl2fastq2 | 2.20.0 | Yes |
bowtie2 | 2.4.5 | Yes |
catalyticfoam | 8 | Yes |
cfitsio | 3.49 | No |
cfitsio | 4.0.0 | Yes |
clam | 13Jan22 | Yes |
cmake | 3.23.1 | Yes |
compass | 0.9.9.9 | Yes |
cst_studio | 2021 | Yes |
cuda | 11.3.1 | No |
cuda | 11.6.2 | Yes |
cudnn | 8.4.1-cuda11.6 | Yes |
deeplabcut | 2.2.0.2 | Yes |
ensembl-vep | 107 | No |
ffmpeg | 4.1.6 | Yes |
fftw | 3.3.10-openmpi | Yes |
freesurfer | 7.3.2 | Yes |
gatk | 4.2.6.1 | Yes |
gcc | 12.1.0 | No |
ghostscript | 9.20 | Yes |
gromacs | 2022.2-intelmpi | Yes |
gulp | 6.0 | Yes |
gulp | 6.0-intelmpi | No |
hdf5 | 1.13.1-intel | Yes |
hdf5-parallel | 1.13.1-intel | Yes |
healpix | 3.81 | Yes |
igv | 2.13.0 | Yes |
intel | 2020.4 | No |
intel | 2022.2 | No |
intelmpi | 2020.4 | No |
intelmpi | 2022.2 | No |
intelpython | 3.7.7-2020.4 | No |
intelpython | 3.9.10-2022.2 | No |
jdftx | 1.7.0 | Yes |
kraken | 2.1.2 | Yes |
lammps-gpu | 15Sep2022-ampere | No |
lammps-gpu | 15Sep2022-volta | Yes |
lua | 5.4.1 | Yes |
masurca | 4.0.8 | Yes |
mathematica | 13.0.1 | Yes |
matlab | 2022a | Yes |
miniconda | 4.12.0 | Yes |
minkowski_engine | 0.5.4 | Yes |
mono | 6.12.0 | Yes |
mpfr | 4.1.0 | Yes |
mplus | 8.7 | Yes |
nagfor | 7.1-7105 | Yes |
nanopore_guppy | 2.3.5 | No |
nanopore_guppy | 3.5.2 | No |
nanopore_guppy | 4.2.2 | No |
nanopore_guppy | 4.5.3 | No |
nanopore_guppy | 5.0.16 | No |
nanopore_guppy | 6.2.1 | No |
nanopore_guppy | 6.3.8 | Yes |
nextflow | 21.10.6 | Yes |
nvidia-hpc-sdk | 22.3 | Yes |
openbugs | 3.2.3 | Yes |
openfoam | 8 | Yes |
openmpi | 4.1.4-gcc | No |
orca | 5.0.3 | Yes |
paraview | 5.9.1 | Yes |
pdftotext | 0.26.5 | Yes |
phonemize | 3.0.1 | Yes |
pigz | 2.6 | Yes |
plink | 2.0-20220603 | Yes |
qupath | 0.2.3 | Yes |
R | 4.2.0 | No |
relion | 3.1.3-gpu | Yes |
relion | 3.1.3-openmpi | No |
relion | 4.0-openmpi | No |
repeatmodeler | 2.0.1 | No |
salmon | 1.9.0 | Yes |
spaceranger | 2.0.0 | Yes |
sqlite | 3.36.0 | Yes |
tensorRT | 6.0.1.5-cuda-10.1 | Yes |
trinity | 2.14.0 | Yes |
vasp | 6.1.1_vtst | No |
vulkan-sdk | 1.2.148.1 | No |
zstd | 1.5.0 | Yes |
The following 9 module files have been added to the development environment:
Application Name | Application Version |
---|---|
alphafold | 2.2.2 |
cst_studio | 2022 |
nanopore_guppy | 6.4.2 |
openssl | 1.1.1s |
python | 3.10.7 |
relion | 4.0-gpu |
vasp | 6.3.1 |
vasp | 6.3.1-gpu |
vasp | 6.3.1-hdf5 |
The following 5 module files have been deprecated:
Application Name | Application Version |
---|---|
bats | 1.3.0 |
bfgwas | 2017 |
f5c | 0.4 |
f5c | 0.4-gpu |
latex | 3.14 |
The following 12 module files have been deleted:
Application Name | Application Version |
---|---|
bamqc | 4b3d20f |
trinity | 2.9.1 |
intel | 2020.1 |
intel | 2020.2 |
intelmpi | 2020.1 |
intelmpi | 2020.2 |
intelpython | 3.7.7-2020.1 |
intelpython | 3.7.7-2020.2 |
libfabric | 1.9.0 |
ghostscript | 9.53.3 |
git | 2.34.1 |
nagfor | 6.2-6243 |