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Modules Update December 2022

Since the last module update in December 2021, we have:

  • added/moved 84 modules to production
  • added 9 modules to the development environment
  • deprecated 5 modules
  • deleted 12 modules

The following 84 module files have been added or moved to production:

Application Name Application Version Set as Default?
alphafold 2.0.0 No
alphafold 2.1.0 Yes
anaconda3 2022.05 No
aspera 3.9.8 Yes
bcftools 1.16 Yes
bcl2fastq2 2.20.0 Yes
bowtie2 2.4.5 Yes
catalyticfoam 8 Yes
cfitsio 3.49 No
cfitsio 4.0.0 Yes
clam 13Jan22 Yes
cmake 3.23.1 Yes
compass 0.9.9.9 Yes
cst_studio 2021 Yes
cuda 11.3.1 No
cuda 11.6.2 Yes
cudnn 8.4.1-cuda11.6 Yes
deeplabcut 2.2.0.2 Yes
ensembl-vep 107 No
ffmpeg 4.1.6 Yes
fftw 3.3.10-openmpi Yes
freesurfer 7.3.2 Yes
gatk 4.2.6.1 Yes
gcc 12.1.0 No
ghostscript 9.20 Yes
gromacs 2022.2-intelmpi Yes
gulp 6.0 Yes
gulp 6.0-intelmpi No
hdf5 1.13.1-intel Yes
hdf5-parallel 1.13.1-intel Yes
healpix 3.81 Yes
igv 2.13.0 Yes
intel 2020.4 No
intel 2022.2 No
intelmpi 2020.4 No
intelmpi 2022.2 No
intelpython 3.7.7-2020.4 No
intelpython 3.9.10-2022.2 No
jdftx 1.7.0 Yes
kraken 2.1.2 Yes
lammps-gpu 15Sep2022-ampere No
lammps-gpu 15Sep2022-volta Yes
lua 5.4.1 Yes
masurca 4.0.8 Yes
mathematica 13.0.1 Yes
matlab 2022a Yes
miniconda 4.12.0 Yes
minkowski_engine 0.5.4 Yes
mono 6.12.0 Yes
mpfr 4.1.0 Yes
mplus 8.7 Yes
nagfor 7.1-7105 Yes
nanopore_guppy 2.3.5 No
nanopore_guppy 3.5.2 No
nanopore_guppy 4.2.2 No
nanopore_guppy 4.5.3 No
nanopore_guppy 5.0.16 No
nanopore_guppy 6.2.1 No
nanopore_guppy 6.3.8 Yes
nextflow 21.10.6 Yes
nvidia-hpc-sdk 22.3 Yes
openbugs 3.2.3 Yes
openfoam 8 Yes
openmpi 4.1.4-gcc No
orca 5.0.3 Yes
paraview 5.9.1 Yes
pdftotext 0.26.5 Yes
phonemize 3.0.1 Yes
pigz 2.6 Yes
plink 2.0-20220603 Yes
qupath 0.2.3 Yes
R 4.2.0 No
relion 3.1.3-gpu Yes
relion 3.1.3-openmpi No
relion 4.0-openmpi No
repeatmodeler 2.0.1 No
salmon 1.9.0 Yes
spaceranger 2.0.0 Yes
sqlite 3.36.0 Yes
tensorRT 6.0.1.5-cuda-10.1 Yes
trinity 2.14.0 Yes
vasp 6.1.1_vtst No
vulkan-sdk 1.2.148.1 No
zstd 1.5.0 Yes

The following 9 module files have been added to the development environment:

Application Name Application Version
alphafold 2.2.2
cst_studio 2022
nanopore_guppy 6.4.2
openssl 1.1.1s
python 3.10.7
relion 4.0-gpu
vasp 6.3.1
vasp 6.3.1-gpu
vasp 6.3.1-hdf5

The following 5 module files have been deprecated:

Application Name Application Version
bats 1.3.0
bfgwas 2017
f5c 0.4
f5c 0.4-gpu
latex 3.14

The following 12 module files have been deleted:

Application Name Application Version
bamqc 4b3d20f
trinity 2.9.1
intel 2020.1
intel 2020.2
intelmpi 2020.1
intelmpi 2020.2
intelpython 3.7.7-2020.1
intelpython 3.7.7-2020.2
libfabric 1.9.0
ghostscript 9.53.3
git 2.34.1
nagfor 6.2-6243