Modules Update December 2022¶
Since the last module update in December 2021, we have:
- added/moved 84 modules to production
- added 9 modules to the development environment
- deprecated 5 modules
- deleted 12 modules
The following 84 module files have been added or moved to production:
| Application Name | Application Version | Set as Default? |
|---|---|---|
| alphafold | 2.0.0 | No |
| alphafold | 2.1.0 | Yes |
| anaconda3 | 2022.05 | No |
| aspera | 3.9.8 | Yes |
| bcftools | 1.16 | Yes |
| bcl2fastq2 | 2.20.0 | Yes |
| bowtie2 | 2.4.5 | Yes |
| catalyticfoam | 8 | Yes |
| cfitsio | 3.49 | No |
| cfitsio | 4.0.0 | Yes |
| clam | 13Jan22 | Yes |
| cmake | 3.23.1 | Yes |
| compass | 0.9.9.9 | Yes |
| cst_studio | 2021 | Yes |
| cuda | 11.3.1 | No |
| cuda | 11.6.2 | Yes |
| cudnn | 8.4.1-cuda11.6 | Yes |
| deeplabcut | 2.2.0.2 | Yes |
| ensembl-vep | 107 | No |
| ffmpeg | 4.1.6 | Yes |
| fftw | 3.3.10-openmpi | Yes |
| freesurfer | 7.3.2 | Yes |
| gatk | 4.2.6.1 | Yes |
| gcc | 12.1.0 | No |
| ghostscript | 9.20 | Yes |
| gromacs | 2022.2-intelmpi | Yes |
| gulp | 6.0 | Yes |
| gulp | 6.0-intelmpi | No |
| hdf5 | 1.13.1-intel | Yes |
| hdf5-parallel | 1.13.1-intel | Yes |
| healpix | 3.81 | Yes |
| igv | 2.13.0 | Yes |
| intel | 2020.4 | No |
| intel | 2022.2 | No |
| intelmpi | 2020.4 | No |
| intelmpi | 2022.2 | No |
| intelpython | 3.7.7-2020.4 | No |
| intelpython | 3.9.10-2022.2 | No |
| jdftx | 1.7.0 | Yes |
| kraken | 2.1.2 | Yes |
| lammps-gpu | 15Sep2022-ampere | No |
| lammps-gpu | 15Sep2022-volta | Yes |
| lua | 5.4.1 | Yes |
| masurca | 4.0.8 | Yes |
| mathematica | 13.0.1 | Yes |
| matlab | 2022a | Yes |
| miniconda | 4.12.0 | Yes |
| minkowski_engine | 0.5.4 | Yes |
| mono | 6.12.0 | Yes |
| mpfr | 4.1.0 | Yes |
| mplus | 8.7 | Yes |
| nagfor | 7.1-7105 | Yes |
| nanopore_guppy | 2.3.5 | No |
| nanopore_guppy | 3.5.2 | No |
| nanopore_guppy | 4.2.2 | No |
| nanopore_guppy | 4.5.3 | No |
| nanopore_guppy | 5.0.16 | No |
| nanopore_guppy | 6.2.1 | No |
| nanopore_guppy | 6.3.8 | Yes |
| nextflow | 21.10.6 | Yes |
| nvidia-hpc-sdk | 22.3 | Yes |
| openbugs | 3.2.3 | Yes |
| openfoam | 8 | Yes |
| openmpi | 4.1.4-gcc | No |
| orca | 5.0.3 | Yes |
| paraview | 5.9.1 | Yes |
| pdftotext | 0.26.5 | Yes |
| phonemize | 3.0.1 | Yes |
| pigz | 2.6 | Yes |
| plink | 2.0-20220603 | Yes |
| qupath | 0.2.3 | Yes |
| R | 4.2.0 | No |
| relion | 3.1.3-gpu | Yes |
| relion | 3.1.3-openmpi | No |
| relion | 4.0-openmpi | No |
| repeatmodeler | 2.0.1 | No |
| salmon | 1.9.0 | Yes |
| spaceranger | 2.0.0 | Yes |
| sqlite | 3.36.0 | Yes |
| tensorRT | 6.0.1.5-cuda-10.1 | Yes |
| trinity | 2.14.0 | Yes |
| vasp | 6.1.1_vtst | No |
| vulkan-sdk | 1.2.148.1 | No |
| zstd | 1.5.0 | Yes |
The following 9 module files have been added to the development environment:
| Application Name | Application Version |
|---|---|
| alphafold | 2.2.2 |
| cst_studio | 2022 |
| nanopore_guppy | 6.4.2 |
| openssl | 1.1.1s |
| python | 3.10.7 |
| relion | 4.0-gpu |
| vasp | 6.3.1 |
| vasp | 6.3.1-gpu |
| vasp | 6.3.1-hdf5 |
The following 5 module files have been deprecated:
| Application Name | Application Version |
|---|---|
| bats | 1.3.0 |
| bfgwas | 2017 |
| f5c | 0.4 |
| f5c | 0.4-gpu |
| latex | 3.14 |
The following 12 module files have been deleted:
| Application Name | Application Version |
|---|---|
| bamqc | 4b3d20f |
| trinity | 2.9.1 |
| intel | 2020.1 |
| intel | 2020.2 |
| intelmpi | 2020.1 |
| intelmpi | 2020.2 |
| intelpython | 3.7.7-2020.1 |
| intelpython | 3.7.7-2020.2 |
| libfabric | 1.9.0 |
| ghostscript | 9.53.3 |
| git | 2.34.1 |
| nagfor | 6.2-6243 |